Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIVLLFIFFC--LGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPT----GLVMATLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS
4R1I Chain:A ((320-469))
-------------FLLFALPGIVYGRITRSLRGEREVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGAVFLKEVGLAGSVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDSVTNIITPMMSYFGLIMATV-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4R1I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91019 for 840 contacts (-108.4/contact) +
2D Compatibility (PS) -14356 + (NN) 2118 + (LL) 4980
1D Compatibility (HY) -12000 + (ID) 1750
Total energy: -112027.0 ( -133.37 by residue)
QMean score : -0.061
(partial model without unconserved sides chains):
PDB file :
Tito_4R1I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R1I-query.scw
PDB file :
Tito_Scwrl_4R1I.pdb
: