Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLKWVS----SYNNERDAWFVLYPPSK-----ASSCFTLIVDVALFSE---
2NSV Chain:A ((1-52))
-NPEDWFTPDTCAYGDSNTAWTTCTTPGQTCYTCCSSCFDVVGEQACQMSAQC
General information:
TITO was launched using:
RESULT:
Template:
2NSV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27300 for 247 contacts (-110.5/contact) +
2D Compatibility (PS) -4196 + (NN) -2129 + (LL) 208
1D Compatibility (HY) -800 + (ID) 500
Total energy: -34717.0 ( -140.55 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_2NSV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NSV-query.scw
PDB file :
Tito_Scwrl_2NSV.pdb
: