Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKKLLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNLIDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQNPQIFGKTMTCGTSI-SLRVPNRKQQFIDKISVIIKEINAIINL--PQKISEFPRIVTLKDLNKIEVLDTLLLKKLSNSSTTENISIDISR--FLELSNMILLLDDMLDVNIYINSFKNNTLETFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGKKYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEYLMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINALKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVINKNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN |
| 3V4R Chain:A ((86-324)) | ---------------------------------------------------------------------------------------------------------------------------------------------FFPNNAVEYFVSY----YDYYQP-EAYV-----PQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREM--VVSLR--TEMEIERNELLRKLVDIQYARN-DIDFQRGTFRVRGDVVEIFP--RDEHCVRVEFFGDEIERIR----EVDALT--GEILGDRD-----HVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGK----------LLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPP---------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18034 for 1426 contacts (-12.6/contact) +
2D Compatibility (PS) -24378 + (NN) -4024 + (LL) 22376
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -41410.0 ( -29.04 by residue)
QMean score : 0.176
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