Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKDVHDLFLNHVNS-NAVKTRKMMGEYIIYYDSVVIGGLYDNRLLVKATKSVRHQLQDNTLVSPYP-------GAKEMILIPD--ITEAINLTNLFELIKNDLKN
2OD0 Chain:A ((3-102))
----KPILKDSMKLFEALGTIKSRSMFGGFGLFADETMFALVVNNQLHIRADQQTSSDFETQ-GLKPYVYKKRGFPVVTKYYAISSELWESSDRLIEVAKKSLEN---
General information:
TITO was launched using:
RESULT:
Template:
2OD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64208 for 624 contacts (-102.9/contact) +
2D Compatibility (PS) -9577 + (NN) -1719 + (LL) 680
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -79874.0 ( -128.00 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_2OD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OD0-query.scw
PDB file :
Tito_Scwrl_2OD0.pdb
: