Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIRSFTILSLLIYLAMMCYTVVTYSKLPTKVPIHYNLAGDADNFADKWVLLLINSAFIVIWLIFFIAGRYYERFAKWSHYNHTPREIRAIKLFLSTLNLEIMS------YMSIFTV-LEIWQIQ-HHHQLNLLWFNMIFIIIIGLTLVIFCLLPTIHKMRDSQ
4EW7 Chain:A ((13-125))
-QSVNKYILSIQDIY-----------KNSPVPVCVR-NQSRK---------IIYANGAFIELF------------SKEDQPLSGDSYNRYGVEVFLSSLELECQSLGHGAAFCRRFNFHGEIYQIRMENISFDNNEIIVLWQINL---------FP---------
General information:
TITO was launched using:
RESULT:
Template:
4EW7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87288 for 666 contacts (-131.1/contact) +
2D Compatibility (PS) -11401 + (NN) -21 + (LL) 5352
1D Compatibility (HY) -7600 + (ID) 1150
Total energy: -102108.0 ( -153.32 by residue)
QMean score : 0.072
(partial model without unconserved sides chains):
PDB file :
Tito_4EW7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EW7-query.scw
PDB file :
Tito_Scwrl_4EW7.pdb
: