Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMQQLSLKHRLNNGDSVYGIFNSIPDPLMIEVIAASGYDFVVIDTEHVAINDETLAHLIRAAEAAHIIPIVRVTAVIDRDIIKVLDMGARGIIVPHVKDRETVEHIVKLSRYYPQGLRSLNGGRMARFGRTPLLDAMEMANEHIMVIAMIEDVEGVMAIDDIAQVEGLDMIVEGAADLSQSLGIPWQTRDDQVTSHVQHIFEVVNAHGKHFCALPREDEDIAKWQAQGVQTFILGDDRGKIYRHLSASLATSKQKGDDG
4TV5 Chain:A ((4-258))
---QLSLKHRLNNGDSVYGIFNSIPDPLMIEVIAASGYDFVVIDTEHVAINDETLAHLIRAAEAAHIIPIVRVTAVIDRDIIKVLDMGARGIIVPHVKDRETVEHIVKLSRYYPQGLRSLN----------PLLDAMEMANEHIMVIAMIEDVEGVMAIDDIAQVEGLDMIVEGAADLSQSLGIPWQTRDDQVTSHVQHIFEVVNAHGKHFCALPREDEDIAKWQAQGVQTFILGDDRGKIYRHLSASLATSKQKGDE-
General information:
TITO was launched using:
RESULT:
Template:
4TV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179326 for 1937 contacts (-92.6/contact) +
2D Compatibility (PS) -27111 + (NN) -14292 + (LL) 684
1D Compatibility (HY) -36000 + (ID) 12200
Total energy: -268245.0 ( -138.48 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_4TV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TV5-query.scw
PDB file :
Tito_Scwrl_4TV5.pdb
: