Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLAEDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARV-SMSSINYRVDLESEYTNHLFANHP-SAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNE--DDMKTFVEQTIYSNAYQSDLKMSITKAPRFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISELTLTRIRQSDY
3EDP Chain:A ((7-235))
---KKPLFEVIASKIKDSINRDEYKTG--MPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQ---NIL-EMTGVMKN-----LKKDIKDFYIRKAGKFYAEIFGMKENELVYSIKFVQKS-EH----GATLDRLILPLGLYPDLQ--AKDFQIINIIELVNS-GKYKLFELEQELQLILAGNEQIKNMHLNENDPVFKLSSVFYAENDMPIAIQYHYEDAESTKYVVDF------
General information:
TITO was launched using:
RESULT:
Template:
3EDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79305 for 1583 contacts (-50.1/contact) +
2D Compatibility (PS) -23485 + (NN) -9595 + (LL) 2476
1D Compatibility (HY) -10000 + (ID) 1900
Total energy: -121809.0 ( -76.95 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_3EDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EDP-query.scw
PDB file :
Tito_Scwrl_3EDP.pdb
: