Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEA----------ALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESS-DEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAAT--IRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGI----NQYLEYDVEAFKKRYRQLREEYYAILD-DGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG |
| 3NF4 Chain:A ((26-384)) | -LTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQ-AGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--SRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANE----KIIDH-GLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186312 for 2794 contacts (-66.7/contact) +
2D Compatibility (PS) -35765 + (NN) -15316 + (LL) 300
1D Compatibility (HY) -2000 + (ID) 2600
Total energy: -241693.0 ( -86.50 by residue)
QMean score : 0.406
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