Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMTHQGFQELKIAISRYLPEDIATNPHLELIENESVETLKNKMIARATNTMRFVATNIMDAQIDAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVRLLHETHLLVSTFATHDDRDCMIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEMRMAATTSLFAQLFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH
4IVN Chain:A ((6-278))
--NLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYKGYSDFRMALAVDLSQT---------------GDICDVSAQSAVDSLQDTAKLIDRKSLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAA-RPEGPLTGGAFASKVGALLLVDVLVNSLLESYPEYKDSVQETAEVVIPLMAN---------
General information:
TITO was launched using:
RESULT:
Template:
4IVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -233882 for 2170 contacts (-107.8/contact) +
2D Compatibility (PS) -28452 + (NN) -11983 + (LL) 2320
1D Compatibility (HY) -14800 + (ID) 3150
Total energy: -289947.0 ( -133.62 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4IVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IVN-query.scw
PDB file :
Tito_Scwrl_4IVN.pdb
: