Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRRKRKWLIVICVLLVLITISQILKHFNYGTESKEAYNTYTVEK---ERQLDLQGKAYPR--EVKTYYKNNQVGTYLGVQVADGQTVKKGDMLINYKINSNKRQQLVDKINDTQHIITEVYLNITKGLNNR----EIQKKLI-------EYKQTLYEAQQQLYQYDSQ----------NRDSMYASFDGKIMIKNIDN---DSD-NQPILYLISK-ESHIKTSVTEFDLNKVKKGDKVNLSITSTGKTGAGIIKQISELPISYEENLSLHENDALHLPESNNDGELANSKSISASPIFKSNNNSELSKYGVIID--DLSLPIRAGYSLEIKVPLN---AIKIPKSVLTKG---NNVFIVNKNSIVEKRNIRIKRIN-GDIIVEKGLKPGDKLIKQPKSTMNDGDKVEISS |
3LNN Chain:A ((27-350)) | ---------------------------------RRTLAVAPATRETVAAPFNLPAMIEADPAKLVKVL-PPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQA--NSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDAD------------------------------------------TRTTKVRMVFDNPDGRLRPGMFAQATFLSQPHEGIVVPMSAIVQSGFYTRAFVEVAPWQFEPRVIKLGAQIGDRMEVKSGLSAGDRVVVKEGVLLND-------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -42224 for 1922 contacts (-22.0/contact) +
2D Compatibility (PS) -30132 + (NN) -531 + (LL) 5520
1D Compatibility (HY) -3600 + (ID) 1950
Total energy: -72917.0 ( -37.94 by residue)
QMean score : 0.312
|
|
|