Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKVLNIFTIAFKSILKNKGRNIFTMIGIIIGISSVITIMSLGNGFKKTAADQFSDAGAGKQEALISFTFKVDEKIKKYPFNQRDIELVNQVDGVLDAKLKENKEEGIEATITNVQKKSDIFIIKKQNLHSFKVGRGFDKEDNELRKKIVVINDQVAKTVFNNNAIGKSLYIEGQGFEVIGITDKLYSDSSTVIMPENTFNYYMGHLHQGLPTLQIIIEDGYNKKTVVKKVESLLNKKGSGSVLGEYTYTDTEEIIKSIDKIFDSITYFVAAVAGISLFIAGIGVMNVMYISVAERTEEIAIRRAFGAKSRDIELQFLIESILICVTSGFIGLILGVVFATIIDVLTPDYIKSVVSLSSVIIAVSVSILIGLLFGWIPARAASK--KELIDIIK |
| 1A87 Chain:A ((91-387)) | SAKVGE---ITITPDNSKPGRYISSNPEYSLL-AKLIDAESIKGTEVYTFHTR------KGQYVKVTVPDSNIDKMRVDYVNWKGPKYNNKLVKRFVSQFLLFRKEEKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRNIR----------------------------------------------------------------SYNEAMASLNKVLANPKM-----KVNKSDKDAIVNAWKQVNAKDMANKIGNLGKAFKVAD----------LAIKVEKIREKSIEGYNTGNW--GPLLLEVESWIIGGVVAGVAISLFGAVLSFLPIS------GLAVTALGVIGIMTISYLSSFIDANRVSNINNIISSVIR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A87.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121342 for 2369 contacts (-51.2/contact) +
2D Compatibility (PS) -30709 + (NN) -869 + (LL) 6280
1D Compatibility (HY) -4800 + (ID) 2000
Total energy: -153440.0 ( -64.77 by residue)
QMean score : 0.268
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