Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRPKRILATIIIFLSLLFTIIYIDDIQKWFNQYTDKLTQNHKGQGHSKWEDFFRGSRITETFGKYQHSPFDGKHYGIDFALPKGTPIKAPTNGKVTRI-FNNELGGKVLQIAEDNGEYHQWYLHLDKYNVKVGDRVKAGDIIAYSGNTGKQTTGAHLHFQRMKGGVGNAYAEDPKPFIEQLPDGERSLYDL
4LXC Chain:A ((21-138))
---------------------------------------------------------------YGPYPLGINGGMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGLIENDGVHRQWYMHLSKYNVKVGDYVKAGQIIGWSGSTG-YSTAPHLHFQRMVNSFSNSTAQDPMPFLKS-----------
General information:
TITO was launched using:
RESULT:
Template:
4LXC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38068 for 846 contacts (-45.0/contact) +
2D Compatibility (PS) -12508 + (NN) -6729 + (LL) 5340
1D Compatibility (HY) -8800 + (ID) 2850
Total energy: -63615.0 ( -75.20 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_4LXC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LXC-query.scw
PDB file :
Tito_Scwrl_4LXC.pdb
: