Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKVVICDDERIIREGLKQIIPWGDYHFNTIYTAKDGVEALSLIQQHQPELVITDIRMPRKNGVDLLNDIALL--DCNVIILSSYDDFEYMKAGIQHHVLDYLLKPVDHAQLEVILGRLVRTLLEQQSQNGRSLASCHDAFQPLLKVEYDDYYVNQIVDQIKQSYQTKVTVSDLIQHIDVSESYAMRTFKDHVGITIVDYLNRYRILQSLQLLDRHYKHYEIADKVGFSEYKMFSYHFKKYLQMSPSDYCKQAK
3CU5 Chain:A ((3-130))
-LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYL------RAIRYVEKPIDPSEIMDALKQSIQTVLQHQAQ-----------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3CU5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96374 for 882 contacts (-109.3/contact) +
2D Compatibility (PS) -13448 + (NN) -11489 + (LL) 10156
1D Compatibility (HY) -12400 + (ID) 2250
Total energy: -125805.0 ( -142.64 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3CU5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CU5-query.scw
PDB file :
Tito_Scwrl_3CU5.pdb
: