Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKIYILLLFLIFLSSCANTRHSESDKNVLTVYS-----PYQSNLIRPILNEFEKQEHVKIEIKHGSTQVLLSNLHNEDFSERGDVFMGGVLSETIDHPEDFVPYQDTSVTQQLEDYRSNNKYVTSFLLMPTVIVVNSDLQGDIKIRGYQDLLQPILKGKIAYSNPNTTTTGYQHMRAIYSMHHRVSDVHQFQNHAMQLSK-----TSKVIEDVAKGKYYAGLSYEQDARTWKNKGYPVSIVYPI----EGTMLNV-DGIALVKNAHPHPKRKKLVQYLTSRSVQQRLVAEFDAKSIRKDVS---EQSDQSIENLKNIPLI-----PKSKLPDIPHHKFLEMIQ- |
4R6Y Chain:A ((1-317)) | -------------------------SMESVVTVYSIDGLHDGDNSWYQVQFDAFTKATGITVRYVEGGGGVVVERLAKERTNPQADVLVTAPPFIQRAAAEKLLANFNTDTASAIPD--ANNLY-SPLVKNYLSFIYNSKLLKTAP-ASWQDLLDGKFKNKLQYSTPGQAADGTAVMLQAFHSFGSKDAGFAYLGKLQANNVGPSASTGKLTALVNKGEIYVANGDLQMNLAQMERNPNVKIFWPANDKGERSALAIPYVIGLVQGAPQSENGKKLINFLLSKEAQTRVSELSWGMPVRSDVTPSDEHYKAATAALEGVQSWQPNWDDVAVSLSADISRWHKVTES |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61021 for 2435 contacts (-25.1/contact) +
2D Compatibility (PS) -31374 + (NN) -5705 + (LL) 3080
1D Compatibility (HY) -10400 + (ID) 3100
Total energy: -108520.0 ( -44.57 by residue)
QMean score : 0.421
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