Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKGHLHSVESLGTVDGPGLRYILFTQGCLLRCLYCHNPDTWKISEPSREVTVDEMVNEILPYKPYFDASGGGVTVSGGEPLLQMPFLEKLFAELKENGVHTCLDTSAGCANDTKAFQRHFEELQKHTDLILLDIKHIDNDKHIRLTGKPNTHILNFARKLSDMKQPVWIRHVLVPGYSDDKDDLIKLGEFINSLDNVEKFEILPYHQLGVHKWKTLGIAYELEDVEAPDDEAVKAAYRYVNFKGKIPVEL
3C8F Chain:A ((1-245))
SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD-THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLE----VTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYG-HKVMF
General information:
TITO was launched using:
RESULT:
Template:
3C8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130526 for 2016 contacts (-64.7/contact) +
2D Compatibility (PS) -26626 + (NN) -18552 + (LL) 732
1D Compatibility (HY) -24400 + (ID) 5550
Total energy: -204922.0 ( -101.65 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3C8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8F-query.scw
PDB file :
Tito_Scwrl_3C8F.pdb
: