Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYFTD---FVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLVKNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKTMNVDIWNFWHYTFTAAMVYAVSGSIWQAL-LAAVIFQVICLK-----VADWTAPMMSEFFDLPG---------VSIATGSTISYAP----GIYLVKLLQK----VPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLAGYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFG-------EREIYIG--LDAAVALGHPAVISTAL--ILVPITVLLAVILP---------------GNQVLPFGDLAT---IPFVVAFIVGAARGNIIHSVIVGTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN- |
| 2BMF Chain:A ((169-618)) | MASIEDNPEIEDDIFRKKRLTIMD--LHPGAGKTKRYLPAIVREAIKRGLR--TLILAPT----------RVVAAEMEEALRGLPIRYQTGREIVDLMCHATFTMRL--------LSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDW-DFVVTTDISEMG----ANFKAERVIDPRRCMKPVILTDGEE-RVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLPVWLAYRVAAEGINYADRRWCFDGVKNNQILEENVEVEIWTKEGERKKLKPRWLDARIYS-----DPLALKEFKEFAAGRK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -330225 for 3015 contacts (-109.5/contact) +
2D Compatibility (PS) -39840 + (NN) 5016 + (LL) 2620
1D Compatibility (HY) -7200 + (ID) 4000
Total energy: -373629.0 ( -123.92 by residue)
QMean score : 0.217
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