Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIHTYE----GHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCKSKDYNLCNHRKGIGTQVDGVFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAHHGVSKIQVNSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQTDLKTYINGITDGYGADVVVECSGAVPAARQGLDIIRKKGFYSQIGIFKDAEIPFDMEK-VIQKEITVVGSRSQKPAD-WEPSLQLMADGLVNAEALVTKIYD-ISKWDEAYQHLKSGEGIKALLKPLDLDENEGEN |
| 2DFV Chain:A ((6-344)) | --AIMKTKPGYGA-ELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHI-VCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD-FRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYP-GKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVF------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165880 for 2887 contacts (-57.5/contact) +
2D Compatibility (PS) -35051 + (NN) -5310 + (LL) 552
1D Compatibility (HY) -23200 + (ID) 5600
Total energy: -234489.0 ( -81.22 by residue)
QMean score : 0.516
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