Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKALKLYGVEDLRYEDNEKPVIESANDVIVKVRATGICGSDTSRYKKMGPYIKGMPFGHEFSGVVDAIGSDVTHVNVGDKVTGCPAIPCYQCEYCLKGEYARCEKLFVIGSYEP------GSFAEYVKLPAQNV--LKVPDNVDYIEAAMVEPSAVVAH-GFYKSNIQPGMTVAVMGCGSIGLLAIQWARIFGAAHIIAIDIDAHKLDIATSLGAHQTINSKEENLEKFIENHYANQ-IDLAIESSGAKVTIGQILTLPKKGGEVVLLGIPYDDIEIDRVHFEKILRNELTV-CGSWNCLSSNFPGKEWTATLHYMKTKDINVKPIISHFLPLEKGPETFDKLVNKKERFDKVMFTIY |
| 4CPD Chain:A ((1-345)) | MRAVVFENKERVAVKEVNAPRLQHPLDALVRVHLAGICGSDLHLYHGKIPVLPGSVLGHEFVGQVEAVGEGIQDLQPGDWVVGPFHIACGTCPYCRRHQYNLCERGGVYG-YGPMFGNLQGAQAEILRVPFSNVNLRKLPPNLSPERAIFAGDILSTAYGGLIQGQLRPGDSVAVIGAGPVGLMAIEVAQVLGASKILAIDRIPERLERAASLGA-IPINAEQENPVRRVRSETNDEGPDLVLEAVGGAATLSLALEMVRPGGRVSAVGV--DNAPSFPFPLASGLVKDLTFRIGLANV------HLYIDAVLALLASGRLQPERIVSHYLPLEEAPRGYE-LFDRKEAL-KVLLVV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233416 for 3012 contacts (-77.5/contact) +
2D Compatibility (PS) -35131 + (NN) -8227 + (LL) 80
1D Compatibility (HY) -21600 + (ID) 5550
Total energy: -303844.0 ( -100.88 by residue)
QMean score : 0.423
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