Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINQVYQLVAP-RQFDVTYNNVD-IYGNHVIVRPLYLSICAADQRYYTGRRDENVLRKKLPMSLVHEAVGEVVFDSKG--VFEKGTKVVMVPNTPTEQH---HIIAENYLASSYFRSSGYDGFMQDYVVMAHDRIVPLPNDIDLSTISYTELVSVSYHAIQRFERKSIPLKNSFGIWGDGNLGYITAILLRKLYPEAKIYVFGKTDYKLSHFS-FVDDIFTVN---------QIPDDLKIDHAFECVGGKGSQVALQQIVEHISPEGSIALLGVSELPVEVNT-RLVLEKGLTLIGSSRSG-SKDFEQVVDLYRKYPDIVEKLALLKGHEINVCTMQDIVQAFEMDLSTSWGKTVLKWTI |
| 2DQ4 Chain:A ((1-342)) | --MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWAR-GRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGS---GVSGKSVLITGAGPIGLMAAMVVRA-SGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVT-GSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVY-SGRV--DLSPLLTHRL---PLSRYREAFGLLASGQAVKVILDPK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207760 for 2827 contacts (-73.5/contact) +
2D Compatibility (PS) -34829 + (NN) -7703 + (LL) 1436
1D Compatibility (HY) -8800 + (ID) 3050
Total energy: -260706.0 ( -92.22 by residue)
QMean score : 0.466
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