Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINQVYQLVAPRQ-FEVTYNNVD-IYSDYVIVRPLYMSICAADQRYYTGSRDENVLSQKLPMSLIHEGVGEVVFDSKG--VFNKGTKVVMVPNTPTEKD-DVIAENYLKSSYFRSSGHDGFMQDFVLLNHDRAVPLPDDIDLSIISYTELVTVSLHAIRRFEKKSISNKNTFGIWGDGNLGYITAILLRKLYPESK-IYVFGKTDYKLSHF-S-FVDDVFFINK---------IPEGLTFDHAFECVGGRGSQSAINQMIDYISPEGSIALLGVSEFPVEVNTR-LVLEKGLTLIGSSRS-GSKDFQDVVDLYIQYPDIVDKLALLKGQEYEIATINDLTEAFEADLSTSWGKTVLKWIM |
| 2D8A Chain:A ((3-347)) | EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQ-SRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCY----------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLA--G--PISGKSVLITGAGPLGLLGIAVAKA-SG-AYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQ-SGKL--NLDPIITHKYK--GFDKYEEAFELMRAGKTGKVVFML-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216902 for 2713 contacts (-79.9/contact) +
2D Compatibility (PS) -34250 + (NN) -10367 + (LL) 2432
1D Compatibility (HY) -9600 + (ID) 3250
Total energy: -271937.0 ( -100.23 by residue)
QMean score : 0.467
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