Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINHLALNTPYFGILLSVIPFFL--ATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDV-ILSMLPQAATTAIALPVSAGIGGIKELTSL-AVILNGVII--YALGNKFLKLFRITNPIARGLALGT-SGHTLGVAPAKELG------PVE-ES-MASIALVLVGVVVVAVVPVFVAIFF
4NQI Chain:A ((14-243))
--------NPVIEITLKTINNLKVNSPPLFTEVIKAANKYQQQAQALSQAGLVLADTLTRLTIHNGGDFGEGFKKLADAIKDLEN-RRDDVAKVLLNEFITPNKQAIEDDQKAIATFEKNYKKDRDQMRQDILKLEAKTRKAGKITELNDKIKESEQLNANKLRDVVLMERRKHATFLSQFNQFLEKEIELSADTMSKFSTNLNTHRDLINSQSQLPLEMESMISKQER-------------------
General information:
TITO was launched using:
RESULT:
Template:
4NQI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110633 for 1216 contacts (-91.0/contact) +
2D Compatibility (PS) -20648 + (NN) -2328 + (LL) 3556
1D Compatibility (HY) 5600 + (ID) 2050
Total energy: -126503.0 ( -104.03 by residue)
QMean score : 0.125
(partial model without unconserved sides chains):
PDB file :
Tito_4NQI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NQI-query.scw
PDB file :
Tito_Scwrl_4NQI.pdb
: