Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNKVLVTGGTGFVGMRIISRLLEQGYEVQTTIRDLSKADKVIKTMQDNGISTERLMFVEADLSQDEHWDEAMKDCKYVLSVASPVFFGKTDDAEVMAKPAIEGIQRILRAAEHA-GVKRVVMTANFGAVGFSNKDKNSITNESHWTNED-----EPGLSVYEKSKLLAEKAAWDFVENENTIVEFATINPVAIFGPSLDAHVSGSFHLLENLLNG-----SMKRVPQIPLNVVDVRDVAELHILAMTNEQANGKRFIATADGQINLLEIAKLIKEKRPEI--------------AQKVSTKKLPDFILSLGAKFNHQAKEGKLLLDM-NRNVSNERAKTLLGWEPIATQEEAILAAIDSMAKFHLI |
| 2NNL Chain:F ((8-325)) | ----VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKV-KHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNI-QEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENN--IDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQF----VHLDDLCNAHIYLFENPKAEG-RYICSSHDCI-ILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTD----LGFEFKYS------LEDMFTGAVDTCRAKGLL------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139320 for 2506 contacts (-55.6/contact) +
2D Compatibility (PS) -31466 + (NN) -8628 + (LL) 4100
1D Compatibility (HY) -24400 + (ID) 5350
Total energy: -205064.0 ( -81.83 by residue)
QMean score : 0.549
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