Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMADRMMDGDTVGKTSNN--PLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGF----ISAKGKETPRNLMAFKDGT--INPRKSNQLKDYVFI--DDG--WAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLA---KEANTSILRRAFNYVDGTDDRTGNFETGLLFIAFQKATKQ-FIDIQNNLGSNDKLNEYITHRGSASFLVLPGVSKG-GYLGETLFD |
| 4GRC Chain:A ((77-436)) | -----------------AVPFHGAHQAGIATPVQDRLHFAAFDVTTEDRAAFVALLKEWTAAARRLTAGHAVGEGAYGGLPEAPPDDTGEALGLKPSRLTLTIGFGPSLFTRFGLADLRPEALADLPKFPGDNLDRARSGGDLCVQACADDPQVAVHAIRNLARIGFGKVVVRWSQLGFGKTSSTTPDEQTPRNLLGFKDGTRNIAGTEKDRLDRFVWAAEKDGTPWMTGGSYLVARRIRMHIETWDRASLQEQEDVFGRDKGEGAPVGKAKERDEPFLKA--------MKPDAHVRLAHPDSNGGATLLRRGYSFTDGTD------DAGLFFLAYQRDIRTGFVPVQRNL-ATDALNEYIQHVGSAVFAVPPGVRDADDWWGSTLF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GRC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133078 for 2805 contacts (-47.4/contact) +
2D Compatibility (PS) -36020 + (NN) -15432 + (LL) 596
1D Compatibility (HY) -24400 + (ID) 7950
Total energy: -216284.0 ( -77.11 by residue)
QMean score : 0.405
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