Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIRGAVVLPNGTGKSQSVLVFAKGDKIAEAEAAGTDYVGEAEYVQKIQQGWFDFDVVVATPDMMGEVG-KLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKIDTASFK
4QVI Chain:A ((1-229))
MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTLGPSVRINPHS--
General information:
TITO was launched using:
RESULT:
Template:
4QVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97180 for 1796 contacts (-54.1/contact) +
2D Compatibility (PS) -25351 + (NN) -14894 + (LL) 196
1D Compatibility (HY) -18800 + (ID) 6100
Total energy: -162129.0 ( -90.27 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_4QVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVI-query.scw
PDB file :
Tito_Scwrl_4QVI.pdb
: