Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIIEAKKQLVDEIAEVLSNSVSTVIVDYRGLTVAEVTDLRSQLREA---GVEYKVYKNTMVRRAAEKAGIEGLDEFLTGPTAIATSSE-DAVAAAKVISGFAKDHEA--LEIKSGVMEGNVITAEEVKTVGSLPSHDGLVSMLLSVLQAPV-----------RNFAYAVKAIGEQKEENAE
1ZAV Chain:A ((5-177))
-----QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKK-----
General information:
TITO was launched using:
RESULT:
Template:
1ZAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64328 for 1044 contacts (-61.6/contact) +
2D Compatibility (PS) -16936 + (NN) -8445 + (LL) 1108
1D Compatibility (HY) -15600 + (ID) 3300
Total energy: -107501.0 ( -102.97 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAV-query.scw
PDB file :
Tito_Scwrl_1ZAV.pdb
: