Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANHEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAVAGAAGGADAAA----EKTEFDVELTSAGSSKIKVVKAVKEATGLGLKDAKELVD--GAPK-VIKEALPKEEAEKLKEQLEEVGATVELK
1DD3 Chain:A ((4-128))
----DEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25658 for 764 contacts (-33.6/contact) +
2D Compatibility (PS) -13341 + (NN) -7125 + (LL) 316
1D Compatibility (HY) -11600 + (ID) 3650
Total energy: -61058.0 ( -79.92 by residue)
QMean score : 0.668
(partial model without unconserved sides chains):
PDB file :
Tito_1DD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD3-query.scw
PDB file :
Tito_Scwrl_1DD3.pdb
: