Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPFIAIEGPIGVGKSSLAHKLSQTLD-FYEEKEIITEN------PFLSDFYEDISKWSFQTEMFFLCNRYKQFQDVT-----QL-NQGVVSDYHIHKNK-IFAK-----NTLSPVEFQKFSKIYDILTED---MIMPNMIIFLDADLDVLKSRIAKRNRSFEHQIEDEYLLKLKKDYREYYES---------LQSNGSNVVLIDTTSIDFLKNEQDYEDILHIILPMIGDITNE
2OCP Chain:A ((1-240))
-GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALM--NIPVLVLDVND-DFSEEVTKQEDLMREVNTFVKN----
General information:
TITO was launched using:
RESULT:
Template:
2OCP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84539 for 1461 contacts (-57.9/contact) +
2D Compatibility (PS) -20490 + (NN) -2879 + (LL) 584
1D Compatibility (HY) -12800 + (ID) 2400
Total energy: -122524.0 ( -83.86 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2OCP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCP-query.scw
PDB file :
Tito_Scwrl_2OCP.pdb
: