Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPHLQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
3WDG Chain:A ((1-216))
MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPHLQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANTYLESVGKSPINWCES--
General information:
TITO was launched using:
RESULT:
Template:
3WDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121450 for 1759 contacts (-69.0/contact) +
2D Compatibility (PS) -23359 + (NN) -10506 + (LL) 248
1D Compatibility (HY) -30000 + (ID) 10750
Total energy: -195817.0 ( -111.32 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_3WDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WDG-query.scw
PDB file :
Tito_Scwrl_3WDG.pdb
: