Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYG--EELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYQPEMYGEKLDLALMYKAF
3FNC Chain:A ((5-161))
DFHIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHV-PLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNL--
General information:
TITO was launched using:
RESULT:
Template:
3FNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74421 for 1157 contacts (-64.3/contact) +
2D Compatibility (PS) -16672 + (NN) -2679 + (LL) 340
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -106682.0 ( -92.21 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3FNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNC-query.scw
PDB file :
Tito_Scwrl_3FNC.pdb
: