Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------------MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFS---KAYVTVLMTIVSLLLSVYPIPYREDYLIHLTFVP----------------------LLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVT-----LIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSE----VIILIPISLIITLASAITFVDIWHFFSLV----NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKSGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHLP-NKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL |
| 1W25 Chain:A ((1-454)) | SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGE-GDTPEALLKRADEGVYQAKASGRNAVVGKAAH-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W25.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -314903 for 2714 contacts (-116.0/contact) +
2D Compatibility (PS) -37785 + (NN) -6089 + (LL) 20
1D Compatibility (HY) -7200 + (ID) 3750
Total energy: -369707.0 ( -136.22 by residue)
QMean score : 0.298
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