Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
1JOO Chain:A ((1-149))
-------------------------------------------------------------------------------ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
General information:
TITO was launched using:
RESULT:
Template:
1JOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41193 for 1061 contacts (-38.8/contact) +
2D Compatibility (PS) -16261 + (NN) -6482 + (LL) 5684
1D Compatibility (HY) -16400 + (ID) 7400
Total energy: -82052.0 ( -77.33 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_1JOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOO-query.scw
PDB file :
Tito_Scwrl_1JOO.pdb
: