Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
1SFJ Chain:A ((3-238))
--HVEVVATITPQ----ETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKL-----SFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
General information:
TITO was launched using:
RESULT:
Template:
1SFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174089 for 1941 contacts (-89.7/contact) +
2D Compatibility (PS) -25036 + (NN) -14969 + (LL) 1224
1D Compatibility (HY) -34800 + (ID) 11050
Total energy: -258720.0 ( -133.29 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1SFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SFJ-query.scw
PDB file :
Tito_Scwrl_1SFJ.pdb
: