Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLLETFEMSIDHQEDGLVVISMPVTDKVKQPFGYLHGGASIALGETACSLGSANLIDTTKFIPLGLEMNANHIHSAKDGRVTATAEIIHRGKSTHVWDIKIKNDKEQLITVMRGTVAIKPLK
4M20 Chain:C ((6-126))
--HLLETFEMSIDHQEDGLVVISMPVTDKVKQPFGYLHGGASIALGETACSLGSANLIDTTKFIPLGLEMNANHIHSAKDGRVTATAEIIHRGKSTHVWDIKIKNDKEQLITVMRGTVAIKPL-
General information:
TITO was launched using:
RESULT:
Template:
4M20.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70696 for 937 contacts (-75.4/contact) +
2D Compatibility (PS) -12540 + (NN) 2024 + (LL) 324
1D Compatibility (HY) -16400 + (ID) 6050
Total energy: -103338.0 ( -110.29 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_4M20.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M20-query.scw
PDB file :
Tito_Scwrl_4M20.pdb
: