Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVQLVLNFIIAVFWLFVTNSYTTNNFVLGFIFGLVLVYLLHRVLPGRFYVITLYRIIKLVIIFLIELIKANFDVLKIIIKPSIKNEPGFFVYHTDLKKDWQIVLLSNLITLTPGTVVLGVSDDRTKIYIHAIDFSTKEQEVESIKTSLEKIVREVGEI
1TQZ Chain:A ((1-133))
MAAELEYESVL-------------------CVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSS------RYFVIRIQDGTGRSAFIGIGFT-DRGDAFDFNVSLQDHFKWVKQE
General information:
TITO was launched using:
RESULT:
Template:
1TQZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114587 for 857 contacts (-133.7/contact) +
2D Compatibility (PS) -14041 + (NN) 1591 + (LL) 2004
1D Compatibility (HY) 1600 + (ID) 850
Total energy: -124283.0 ( -145.02 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1TQZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQZ-query.scw
PDB file :
Tito_Scwrl_1TQZ.pdb
: