Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKISKALTWFIISFII-FHLILFIMWGEHQEYWYLYTGIMLIAGISYVFYQRDIESKRLLTSIGVGIITAIILIMLQLLFSLITSNLSYSSLIKELARTGVNWKWQ-MLVTLLFVIP--CHELYMRTVLQKELTHFSIPKWIAILITAICSSSLFIYLDNWWIVTFIFVAQVILSLSYEYTRRIATTSVAQIVAIILLLIFNA
3ZC4 Chain:A ((8-164))
--PVAETISKRFWTLIKMLRFYVVL-----RRFGYI---------------------DPLIYSIDPKQIKDVLSEALREFVSYTSSSSSRSIVIYDDPKNPVTAQAPCLVVAKRDEIPQNFPSIYRYTIYKIDKS------------SEYCISPLVVN-DKYATLI-----TPNESVIKEFFDKLDS-NIQYARVLASLAVGGE
General information:
TITO was launched using:
RESULT:
Template:
3ZC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198615 for 1107 contacts (-179.4/contact) +
2D Compatibility (PS) -15619 + (NN) 4938 + (LL) 4708
1D Compatibility (HY) -6400 + (ID) 1250
Total energy: -212238.0 ( -191.72 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_3ZC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZC4-query.scw
PDB file :
Tito_Scwrl_3ZC4.pdb
: