Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
2YWV Chain:B ((9-236))
--LLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANHFIEKLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADGAILLADEISPDTCRLWDAKTNEKLDKDVFRRDLGSLTDAYEVILQRL----
General information:
TITO was launched using:
RESULT:
Template:
2YWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71526 for 1798 contacts (-39.8/contact) +
2D Compatibility (PS) -24304 + (NN) -4060 + (LL) 528
1D Compatibility (HY) -26800 + (ID) 6500
Total energy: -132662.0 ( -73.78 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_2YWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWV-query.scw
PDB file :
Tito_Scwrl_2YWV.pdb
: