Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRRAHAKKPLTTK-SCKVKEGYMRRAHAKKPLTTKSCKVKEGYMHRAQAKKPLTTKGCKEEEGYMHRAHA--------------------------------------------------------------------------------------------------------------------------------- |
| 4LYP Chain:A ((34-449)) | SEFAFVKIASDGKGFTRYGEPYLIRGANYWQGMNLGADDCSGGDRKRMELEIKQMAEMGINNLRVMASSEGPDDQPYRMRPSMMPQPGKYNEGVFVGLDYLLDTMDRYNMTAVMTLGNFWQWSGGFGQYVAWITGNQTIPYPVGDVTYDEFTQFAARFYNDSEIAPKANKLFKDHIYTVQNRRNTVNGKIYKEDPVIMSWQIANEPQEAPASWFEEISTFIKKGAPKHLVSAGLESKLDEYDFDRAHDHKNIDYTTCHC---WVENWGIYDPADPDGLPHANEYMHDFLESRSKWAAQLNKPIVMEEFGMARDAWRNPEDETYKYLPSTPTSHKDEYYQKAFNQIVSLASNRSFSGSNFWAYGGEGRSTYPPNPYGMVWLGDPPHEPHGWYSVYSNDTTVQIIKDYNANLLKVQKELSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5062 for 326 contacts (15.5/contact) +
2D Compatibility (PS) -6986 + (NN) -850 + (LL) -4
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -7028.0 ( -21.56 by residue)
QMean score : 0.490
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