Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKQATMKNAALKQLTKDADEILHLIKVQLDNLTLPSCPLYEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEAFTLV
2ODM Chain:A ((5-87))
----ATMKNAALKQLTKDADEILHLIKVQLDNL----CPLYEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEA----
General information:
TITO was launched using:
RESULT:
Template:
2ODM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4009 for 432 contacts (9.3/contact) +
2D Compatibility (PS) -8541 + (NN) -6599 + (LL) 1020
1D Compatibility (HY) 2400 + (ID) 300
Total energy: -8011.0 ( -18.54 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_2ODM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ODM-query.scw
PDB file :
Tito_Scwrl_2ODM.pdb
: