Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEIAKSLLDIEAVTLSPNDLYTWSSGIKSPIYCDNRVTLGYPLVRGAIRDGLINLIKEHFPEVEVISGTATAGIPHAAFIAEKLKLPMNYVRSSNKSHGKQNQIEGAKSEGKKVVVIEDLISTGGSSVTAVEALKQAGAEVLGVVAIFTYGLKKADDTFSNIQLPFYTLSDYNELIEVAENEGKISSEDIQTLVEWRDNLA
4RV4 Chain:A ((25-227))
MKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVR----------QIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPA
General information:
TITO was launched using:
RESULT:
Template:
4RV4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155655 for 1604 contacts (-97.0/contact) +
2D Compatibility (PS) -20761 + (NN) -4798 + (LL) -124
1D Compatibility (HY) -20800 + (ID) 5800
Total energy: -207938.0 ( -129.64 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_4RV4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV4-query.scw
PDB file :
Tito_Scwrl_4RV4.pdb
: