Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
4U82 Chain:A ((19-254))
------------------LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLS--
General information:
TITO was launched using:
RESULT:
Template:
4U82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107284 for 1852 contacts (-57.9/contact) +
2D Compatibility (PS) -25252 + (NN) -9082 + (LL) 1340
1D Compatibility (HY) -34000 + (ID) 11800
Total energy: -186078.0 ( -100.47 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_4U82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U82-query.scw
PDB file :
Tito_Scwrl_4U82.pdb
: