Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDKEK-QDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK-------
1JOR Chain:A ((1-149))
-------------------------------------ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYA-DGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
General information:
TITO was launched using:
RESULT:
Template:
1JOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5096 for 1002 contacts (-5.1/contact) +
2D Compatibility (PS) -14791 + (NN) -5934 + (LL) 2976
1D Compatibility (HY) -8800 + (ID) 2600
Total energy: -34245.0 ( -34.18 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1JOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOR-query.scw
PDB file :
Tito_Scwrl_1JOR.pdb
: