Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYI-MGNKDLIENA---TLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEV-ADGIVIGSEIVKRF-KSNTREEIIRYLQSIQQTLNN
1RD5 Chain:A ((20-259))
----FIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRS----LAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKN
General information:
TITO was launched using:
RESULT:
Template:
1RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195182 for 1913 contacts (-102.0/contact) +
2D Compatibility (PS) -26356 + (NN) -14182 + (LL) 1000
1D Compatibility (HY) -21200 + (ID) 4250
Total energy: -260170.0 ( -136.00 by residue)
QMean score : 0.728
(partial model without unconserved sides chains):
PDB file :
Tito_1RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RD5-query.scw
PDB file :
Tito_Scwrl_1RD5.pdb
: