Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIVVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKRI
3P5N Chain:A ((10-188))
-QQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGM-----------KVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKR-
General information:
TITO was launched using:
RESULT:
Template:
3P5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155119 for 1286 contacts (-120.6/contact) +
2D Compatibility (PS) -17164 + (NN) -4816 + (LL) 1276
1D Compatibility (HY) -35600 + (ID) 8350
Total energy: -219773.0 ( -170.90 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_3P5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P5N-query.scw
PDB file :
Tito_Scwrl_3P5N.pdb
: