Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNCQSESVVRLCVRYAEQLSV---FEEFTVLDILGDISVDQISDGTLYYTCEKFKLLVLQGNVLGVQIITNNDESTCEVKYRKMF
1D8J Chain:A ((12-49))
-------VLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLK----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1D8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21806 for 173 contacts (-126.0/contact) +
2D Compatibility (PS) -3628 + (NN) -452 + (LL) 3696
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -23740.0 ( -137.23 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1D8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8J-query.scw
PDB file :
Tito_Scwrl_1D8J.pdb
: