Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEG-TDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNS--EEKGTVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYNATK
2RCV Chain:A ((2-201))
-AYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSER-
General information:
TITO was launched using:
RESULT:
Template:
2RCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65992 for 1573 contacts (-42.0/contact) +
2D Compatibility (PS) -20651 + (NN) -3165 + (LL) 272
1D Compatibility (HY) -22800 + (ID) 7150
Total energy: -119486.0 ( -75.96 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_2RCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RCV-query.scw
PDB file :
Tito_Scwrl_2RCV.pdb
: