Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEV----RKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKP-SSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
1ZAB Chain:D ((10-143))
--VEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK--DFRAIAISSDLQEEFISPCGACRQVMREF-GTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ
General information:
TITO was launched using:
RESULT:
Template:
1ZAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41433 for 970 contacts (-42.7/contact) +
2D Compatibility (PS) -14401 + (NN) -9470 + (LL) -76
1D Compatibility (HY) -12000 + (ID) 3250
Total energy: -80630.0 ( -83.12 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAB-query.scw
PDB file :
Tito_Scwrl_1ZAB.pdb
: