Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALG-NVTGMDLSVDMLTVAAQKSA----NVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
3D2L Chain:A ((6-242))
-----QFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD-HYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK
General information:
TITO was launched using:
RESULT:
Template:
3D2L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151537 for 1877 contacts (-80.7/contact) +
2D Compatibility (PS) -24873 + (NN) -8310 + (LL) 712
1D Compatibility (HY) -20400 + (ID) 5150
Total energy: -209558.0 ( -111.65 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_3D2L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D2L-query.scw
PDB file :
Tito_Scwrl_3D2L.pdb
: