Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
3W34 Chain:A ((4-206))
-PKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLA--
General information:
TITO was launched using:
RESULT:
Template:
3W34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76164 for 1613 contacts (-47.2/contact) +
2D Compatibility (PS) -22104 + (NN) -9913 + (LL) 436
1D Compatibility (HY) -19600 + (ID) 5000
Total energy: -132345.0 ( -82.05 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3W34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W34-query.scw
PDB file :
Tito_Scwrl_3W34.pdb
: