Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
1W3B Chain:A ((176-380))
------GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMG---------
General information:
TITO was launched using:
RESULT:
Template:
1W3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97164 for 1680 contacts (-57.8/contact) +
2D Compatibility (PS) -22200 + (NN) -15789 + (LL) 1612
1D Compatibility (HY) -6800 + (ID) 2550
Total energy: -142891.0 ( -85.05 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_1W3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W3B-query.scw
PDB file :
Tito_Scwrl_1W3B.pdb
: