Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI
3T8R Chain:A ((4-129))
---STKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGP----ESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDT-----------
General information:
TITO was launched using:
RESULT:
Template:
3T8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59024 for 821 contacts (-71.9/contact) +
2D Compatibility (PS) -13082 + (NN) -4822 + (LL) 1712
1D Compatibility (HY) -16400 + (ID) 6100
Total energy: -97716.0 ( -119.02 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_3T8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T8R-query.scw
PDB file :
Tito_Scwrl_3T8R.pdb
: